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  5. ATCG00800

ATCG00800


Description : structural constituent of ribosome


Gene families : OG0006596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG00800
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Aev_g14422 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.33 OrthoFinder output from all 47 species
Als_g09230 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g23172 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g05105 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.05G042400.1 Ceric.05G042400 component *(uS3c) of small plastid ribosomal-subunit... 0.21 OrthoFinder output from all 47 species
Ceric.05G052300.1 Ceric.05G052300 component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.07G056500.1 Ceric.07G056500 component *(uS3c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.1Z164000.1 Ceric.1Z164000 not classified & original description: pacid=50596956... 0.07 OrthoFinder output from all 47 species
Ceric.29G004400.1 Ceric.29G004400 component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.29G068400.1 Ceric.29G068400 component *(uS3c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.38G009200.1 Ceric.38G009200 component *(uS3c) of small plastid ribosomal-subunit... 0.21 OrthoFinder output from all 47 species
Dcu_g13090 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Gb_15033 No alias component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
LOC_Os04g16824.1 LOC_Os04g16824 component psRPS3 of small ribosomal subunit proteome 0.32 OrthoFinder output from all 47 species
LOC_Os09g24416.1 LOC_Os09g24416 component psRPS3 of small ribosomal subunit proteome 0.3 OrthoFinder output from all 47 species
Lfl_g28864 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.21 OrthoFinder output from all 47 species
Msp_g15785 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ore_g10343 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Pir_g00314 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028730 No alias not classified & original description: CDS=1-393 0.11 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028813 No alias component *(uS3c) of small plastid ribosomal-subunit... 0.13 OrthoFinder output from all 47 species
Solyc00g500034.1.1 Solyc00g500034 component psRPL22 of large ribosomal subunit proteome.... 0.09 OrthoFinder output from all 47 species
Solyc09g050066.1.1 Solyc09g050066 30S ribosomal protein S3, chloroplastic OS=Solanum... 0.03 OrthoFinder output from all 47 species
Zm00001e003906_P001 Zm00001e003906 component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e009620_P001 Zm00001e009620 component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e011301_P001 Zm00001e011301 component psRPS3 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e042087_P001 Zm00001e042087 component psRPS3 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000312 plastid small ribosomal subunit TAS Interproscan
MF GO:0003735 structural constituent of ribosome TAS Interproscan
BP GO:0006091 generation of precursor metabolites and energy RCA Interproscan
BP GO:0006354 DNA-templated transcription elongation RCA Interproscan
BP GO:0006412 translation TAS Interproscan
CC GO:0009295 nucleoid IDA Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
CC GO:0009941 chloroplast envelope IDA Interproscan
BP GO:0015979 photosynthesis RCA Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
CC GO:0000313 organellar ribosome IEP HCCA
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009534 chloroplast thylakoid IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009544 chloroplast ATP synthase complex IEP HCCA
CC GO:0009547 plastid ribosome IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
BP GO:0009769 photosynthesis, light harvesting in photosystem II IEP HCCA
BP GO:0009772 photosynthetic electron transport in photosystem II IEP HCCA
BP GO:0009970 cellular response to sulfate starvation IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
CC GO:0010319 stromule IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031976 plastid thylakoid IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042776 proton motive force-driven mitochondrial ATP synthesis IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
MF GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity IEP HCCA
CC GO:0045259 proton-transporting ATP synthase complex IEP HCCA
CC GO:0045267 proton-transporting ATP synthase, catalytic core IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098807 chloroplast thylakoid membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 131 213
No external refs found!