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  5. ATCG01280

ATCG01280 (YCF2.2)


Aliases : YCF2.2

Description : Chloroplast Ycf2;ATPase, AAA type, core


Gene families : OG0003470 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATCG01280
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00217120 YCF2.1,... Protein Ycf2 OS=Amborella trichopoda 0.14 OrthoFinder output from all 47 species
AMTR_s00543p00008950 YCF2.1,... Protein Ycf2 OS=Morus indica 0.04 OrthoFinder output from all 47 species
GSVIVT01029119001 YCF2.1 Protein Ycf2 OS=Vitis vinifera 0.12 OrthoFinder output from all 47 species
GSVIVT01029605001 No alias Protein Ycf2 OS=Vitis vinifera 0.14 OrthoFinder output from all 47 species
Solyc00g500037.1.1 YCF2.1, Solyc00g500037 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc00g500046.1.1 YCF2.1, Solyc00g500046 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc00g500081.1.1 YCF2.1, Solyc00g500081 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc00g500128.1.1 YCF2.1, Solyc00g500128 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc00g500198.1.1 YCF2.1, Solyc00g500198 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc00g500327.1.1 YCF2.1, Solyc00g500327 regulatory component YCF2 of AAA-ATPase motor complex 0.14 OrthoFinder output from all 47 species
Solyc02g014780.1.1 YCF2.1, Solyc02g014780 Protein Ycf2 OS=Nicotiana tabacum (sp|p09976|ycf2_tobac : 133.0) 0.04 OrthoFinder output from all 47 species
Solyc03g013490.1.1 YCF2.1, Solyc03g013490 regulatory component YCF2 of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
Solyc03g020090.1.1 YCF2.1, Solyc03g020090 Protein Ycf2 OS=Daucus carota (sp|q0g9q1|ycf2_dauca : 187.0) 0.04 OrthoFinder output from all 47 species
Solyc03g058250.1.1 YCF2.1, Solyc03g058250 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc04g024540.1.1 YCF2.1, Solyc04g024540 regulatory component YCF2 of AAA-ATPase motor complex 0.05 OrthoFinder output from all 47 species
Solyc10g019000.3.1 YCF2.1, Solyc10g019000 regulatory component YCF2 of AAA-ATPase motor complex 0.02 OrthoFinder output from all 47 species
Solyc12g035790.2.1 YCF2.1, Solyc12g035790 regulatory component YCF2 of AAA-ATPase motor complex 0.17 OrthoFinder output from all 47 species
Zm00001e009619_P001 YCF2.1, Zm00001e009619 Protein Ycf2 OS=Lemna minor (sp|a9l9d9|ycf2_lemmi : 100.0) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000312 plastid small ribosomal subunit IEP HCCA
CC GO:0000314 organellar small ribosomal subunit IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003989 acetyl-CoA carboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
CC GO:0009329 acetate CoA-transferase complex IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016421 CoA carboxylase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR008543 Uncharacterised_Ycf2 1 1494
IPR003959 ATPase_AAA_core 1644 1815
No external refs found!