ATMG00080 (RPL16)

Aliases : RPL16

Description : ribosomal protein L16

Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATMG00080
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s02809p00000680	evm_27.TU.AmTr_v1...	50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda	0.04	OrthoFinder output from all 47 species
ATCG00790	RPL16	ribosomal protein L16	0.06	OrthoFinder output from all 47 species
Aob_g10973	RPL16	component *(uL16m) of large mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Aop_g00855	RPL16	component *(uL16m) of large mitoribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ceric.05G042300.1	RPL16, Ceric.05G042300	component *(uL16c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Ceric.05G052200.1	RPL16, Ceric.05G052200	not classified & original description: pacid=50577977...	0.12	OrthoFinder output from all 47 species
Ceric.1Z020000.1	RPL16, Ceric.1Z020000	not classified & original description: pacid=50586397...	0.05	OrthoFinder output from all 47 species
Ceric.29G004300.1	RPL16, Ceric.29G004300	not classified & original description: pacid=50624823...	0.06	OrthoFinder output from all 47 species
Ceric.35G023300.1	RPL16, Ceric.35G023300	not classified & original description: pacid=50581973...	0.04	OrthoFinder output from all 47 species
Ceric.38G009100.1	RPL16, Ceric.38G009100	component *(uL16c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Gb_05912	RPL16	component mtRPL16 of large ribosomal subunit proteome	0.21	OrthoFinder output from all 47 species
Gb_40955	RPL16	50S ribosomal protein L16, chloroplastic...	0.02	OrthoFinder output from all 47 species
LOC_Os01g57958.1	LOC_Os01g57958	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.04	OrthoFinder output from all 47 species
LOC_Os04g16826.1	LOC_Os04g16826	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.04	OrthoFinder output from all 47 species
LOC_Os10g21344.1	LOC_Os10g21344	50S ribosomal protein L16, chloroplastic OS=Oryza nivara...	0.04	OrthoFinder output from all 47 species
LOC_Os12g34128.1	LOC_Os12g34128	component mtRPL16 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Mp1g22400.1	No alias	60S ribosomal protein L16, mitochondrial OS=Marchantia...	0.05	OrthoFinder output from all 47 species
Ore_g00369	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812	RPL16	component *(uL16c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Sam_g33347	No alias	component *(uL16m) of large mitoribosomal-subunit...	0.07	OrthoFinder output from all 47 species
Solyc00g500245.1.1	Solyc00g500245	component mtRPL16 of large ribosomal subunit proteome....	0.09	OrthoFinder output from all 47 species
Solyc05g045840.1.1	RPL16, Solyc05g045840	60S ribosomal protein L16, mitochondrial OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc08g074700.1.1	RPL16, Solyc08g074700	component mtRPL16 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000315	organellar large ribosomal subunit	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	TAS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005762	mitochondrial large ribosomal subunit	TAS	Interproscan
BP	GO:0006412	translation	TAS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003727	single-stranded RNA binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0004129	cytochrome-c oxidase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
CC	GO:0005751	mitochondrial respiratory chain complex IV	IEP	HCCA
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0008187	poly-pyrimidine tract binding	IEP	HCCA
MF	GO:0008266	poly(U) RNA binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0008535	respiratory chain complex IV assembly	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016675	oxidoreductase activity, acting on a heme group of donors	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
BP	GO:0017004	cytochrome complex assembly	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
CC	GO:0045277	respiratory chain complex IV	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	39	176

External Links

No external refs found!

ATMG00080 (RPL16)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation