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  5. ATMG00090

ATMG00090


Description : structural constituent of ribosome;protein binding


Gene families : OG0009011 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009011_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ATMG00090

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272590 evm_27.TU.AmTr_v1... Ribosomal protein S3, mitochondrial OS=Petunia hybrida 0.04 OrthoFinder output from all 47 species
Aev_g20617 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g25281 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g05492 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g23054 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g29749 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g18051 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g33316 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ceric.23G029400.1 Ceric.23G029400 not classified & original description: pacid=50610062... 0.06 OrthoFinder output from all 47 species
Dde_g51885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_13807 No alias Ribosomal protein S3, mitochondrial OS=Zea mays... 0.08 OrthoFinder output from all 47 species
LOC_Os12g34054.1 LOC_Os12g34054 component mtRPS3 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
LOC_Os12g34124.1 LOC_Os12g34124 component mtRPS3 of small ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Len_g01174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g38544 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g05170.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Nbi_g22008 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Pir_g61975 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g08984 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc05g045826.1.1 Solyc05g045826 Ribosomal protein S3, mitochondrial OS=Petunia hybrida... 0.01 OrthoFinder output from all 47 species
Spa_g02218 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11330 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome TAS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0005763 mitochondrial small ribosomal subunit TAS Interproscan
BP GO:0006412 translation TAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
CC GO:0005762 mitochondrial large ribosomal subunit IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR001351 Ribosomal_S3_C 463 539
No external refs found!