ATMG00220 (COB)

Aliases : COB

Description : apocytochrome b

Gene families : OG0002807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002807_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATMG00220
Cluster	HCCA: Cluster_88

Target	Alias	Description	ECC score	Gene Family Method
Gb_16762	No alias	cytochrome b component of cytochrome c reductase complex	0.03	OrthoFinder output from all 47 species
Pp3c21_5670V3.1	PETD, Pp3c21_5670	photosynthetic electron transfer D	0.02	OrthoFinder output from all 47 species
Sam_g14362	No alias	apocytochrome b component of cytochrome c reductase...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISS	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005750	mitochondrial respiratory chain complex III	IDA	Interproscan
CC	GO:0005750	mitochondrial respiratory chain complex III	TAS	Interproscan
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
MF	GO:0008121	ubiquinol-cytochrome-c reductase activity	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
BP	GO:0009060	aerobic respiration	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015078	proton transmembrane transporter activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	None	Extended
BP	GO:0015980	energy derivation by oxidation of organic compounds	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0045275	respiratory chain complex III	None	Extended
BP	GO:0045333	cellular respiration	None	Extended
CC	GO:0070069	cytochrome complex	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098800	inner mitochondrial membrane protein complex	None	Extended
CC	GO:0098803	respiratory chain complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1902495	transmembrane transporter complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended
CC	GO:1990351	transporter complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000314	organellar small ribosomal subunit	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	HCCA
BP	GO:0006120	mitochondrial electron transport, NADH to ubiquinone	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005797	Cyt_b/b6_N	24	211
IPR005798	Cyt_b/b6_C	265	366

External Links

No external refs found!

ATMG00220 (COB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation