1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g32560

Pnu_g32560 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : endoribonuclease (DCL2) of transacting siRNA pathway & original description: none


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g32560

Target Alias Description ECC score Gene Family Method Actions
Als_g31913 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g01355 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Gb_32044 ATDCL2, DCL2 Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022615 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015926 glucosidase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0051118 glucan endo-1,3-alpha-glucosidase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 363 479
IPR000999 RNase_III_dom 1228 1338
IPR000999 RNase_III_dom 1022 1151
IPR006935 Helicase/UvrB_N 36 196
IPR003100 PAZ_dom 857 979
No external refs found!