1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g32597

Pnu_g32597 (UBQ6)


Aliases : UBQ6

Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g32597
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.02 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.02 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.02 OrthoFinder output from all 47 species
AT4G02890 UBQ14 Ubiquitin family protein 0.03 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Als_g63594 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Cba_g23546 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g45522 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g74420 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g75677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Dcu_g38726 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Gb_15027 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_40288 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_529552g0010 UBQ6 component RPS27a of SSU proteome 0.02 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c12_5760V3.1 UBQ6, Pp3c12_5760 ubiquitin 6 0.01 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Ppi_g04808 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g21071 UBQ11 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g27133 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g40236 UBQ11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo111605 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc01g068045.1.1 UBQ6, Solyc01g068045 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc08g008590.4.1 Solyc08g008590 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc08g083120.3.1 Solyc08g083120 component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Solyc12g099025.1.1 UBQ6, Solyc12g099025 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002906 Ribosomal_S27a 101 145
IPR000626 Ubiquitin-like_dom 3 71
No external refs found!