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  5. Cpa|evm.model.tig00000057.66

Cpa|evm.model.tig00000057.66 (ATH1, ATATH1, ABCA2)


Aliases : ATH1, ATATH1, ABCA2

Description : ABC transporter A family member 2 OS=Arabidopsis thaliana


Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000057.66
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Aev_g01527 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09766 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0022.g016230 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: CDS=354-3422 0.02 OrthoFinder output from all 47 species
Cre14.g613950 ATH1, ATATH1, ABCA2 ABC transporter A family member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g20236 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008042001 ATH1, ATATH1, ABCA2 Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Len_g24553 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02291 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g18500.1 ATH1, ATATH1, ABCA2 fatty acid transporter (ABCA). subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Msp_g36286 ATH15, ATATH15 subfamily ABCA transporter & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g40904 ABCA1, AtABCA1 subfamily ABCA transporter & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g08946 ATH1, ATATH1, ABCA2 subfamily ABCA transporter & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g25161 No alias subfamily ABCA transporter & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g52242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo76005 ATH1, ATATH1, ABCA2 Solute transport.primary active transport.ABC... 0.01 OrthoFinder output from all 47 species
Solyc03g113070.4.1 ATH1, ATATH1,... fatty acid transporter (ABCA). subfamily ABCA transporter 0.01 OrthoFinder output from all 47 species
Solyc06g070960.3.1 ATH1, ATATH1,... fatty acid transporter (ABCA). subfamily ABCA transporter 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR018946 PhoD-like_MPP 967 1123
IPR003439 ABC_transporter-like_ATP-bd 496 599
No external refs found!