Cpa|evm.model.tig00000158.16 (EMB1989, RPB2, NRPB2)

Aliases : EMB1989, RPB2, NRPB2

Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 2

Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00000158.16

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00020p00246930	NRPC2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
AMTR_s00068p00181410	EMB1989, RPB2,...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Ala_g21244	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Als_g03892	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene14109.t1	NRPD2B, Aspi01Gene14109	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene47963.t1	NRPC2, Aspi01Gene47963	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0084.g039092	EMB1989, RPB2, NRPB2	not classified & original description: CDS=1-1137	0.03	OrthoFinder output from all 47 species
Cba_g01346	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ceric.05G021300.1	EMB1989, RPB2,...	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Ceric.30G032600.1	NRPC2, Ceric.30G032600	component *(NRPC2) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Cre02.g075150	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.05	OrthoFinder output from all 47 species
Dac_g06906	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Dcu_g09431	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.01	OrthoFinder output from all 47 species
GSVIVT01020543001	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder output from all 47 species
GSVIVT01036597001	NRPC2	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Gb_30006	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
LOC_Os03g44484.1	EMB1989, RPB2,...	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.03	OrthoFinder output from all 47 species
MA_10429035g0010	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.01	OrthoFinder output from all 47 species
MA_10429035g0020	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
MA_10429035g0030	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10432131g0010	EMB1989, RPB2, NRPB2	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum...	0.01	OrthoFinder output from all 47 species
Mp4g21160.1	EMB1989, RPB2, NRPB2	subunit 2 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species
Nbi_g01478	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Ore_g18280	NRPC2	component *(NRPC2) of RNA polymerase III complex &...	0.02	OrthoFinder output from all 47 species
Pnu_g00855	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Pp3c5_18580V3.1	EMB1989, RPB2,...	nuclear RNA polymerase A2	0.01	OrthoFinder output from all 47 species
Sam_g26686	No alias	component *(NRPB2) of RNA polymerase II complex &...	0.01	OrthoFinder output from all 47 species
Smo148107	EMB1989, RPB2, NRPB2	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.02	OrthoFinder output from all 47 species
Smo443461	NRPC2	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
Solyc02g078260.3.1	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.02	OrthoFinder output from all 47 species
Spa_g27723	EMB1989, RPB2, NRPB2	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g05664	EMB1989, RPB2, NRPB2	component *(NRPB2) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e012400_P001	EMB1989, RPB2,...	subunit 2 of Pol II RNA polymerase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007645	RNA_pol_Rpb2_3	471	535
IPR007647	RNA_pol_Rpb2_5	638	691
IPR007644	RNA_pol_bsu_protrusion	43	447
IPR007646	RNA_pol_Rpb2_4	570	629
IPR007120	DNA-dir_RNAP_su2_dom	861	1079
IPR007120	DNA-dir_RNAP_su2_dom	709	758
IPR007642	RNA_pol_Rpb2_2	211	399
IPR007641	RNA_pol_Rpb2_7	1081	1151

External Links

No external refs found!

Cpa|evm.model.tig00000158.16 (EMB1989, RPB2, NRPB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation