Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D1 component
Gene families : OG0003223 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003223_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000754.23 | |
| Cluster | HCCA: Cluster_85 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00127560 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| AT3G07590 | No alias | Small nuclear ribonucleoprotein family protein | 0.03 | OrthoFinder output from all 47 species | |
| AT4G02840 | No alias | Small nuclear ribonucleoprotein family protein | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g077290 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04085 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g20682 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0093.g043309 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.11G065500.1 | Ceric.11G065500 | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Cre16.g665400 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g24843 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g10626 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os02g37430.1 | LOC_Os02g37430 | component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... | 0.04 | OrthoFinder output from all 47 species | |
| Mp1g03900.1 | No alias | component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g00077 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.01 | OrthoFinder output from all 47 species | |
| Pp3c5_16280V3.1 | Pp3c5_16280 | Small nuclear ribonucleoprotein family protein | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0101.g019834 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g42470 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g48911 | No alias | component *(Sm-D1) of U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041053_P001 | Zm00001e041053 | component Sm-D1 of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003924 | GTPase activity | IEP | HCCA |
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | HCCA |
| MF | GO:0005048 | signal sequence binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005786 | signal recognition particle, endoplasmic reticulum targeting | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006605 | protein targeting | IEP | HCCA |
| BP | GO:0006612 | protein targeting to membrane | IEP | HCCA |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| MF | GO:0008312 | 7S RNA binding | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | HCCA |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| MF | GO:0030942 | endoplasmic reticulum signal peptide binding | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0033218 | amide binding | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
| MF | GO:0042277 | peptide binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| BP | GO:0045047 | protein targeting to ER | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| CC | GO:0048500 | signal recognition particle | IEP | HCCA |
| BP | GO:0051668 | localization within membrane | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | HCCA |
| BP | GO:0072657 | protein localization to membrane | IEP | HCCA |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001163 | LSM_dom_euk/arc | 5 | 69 |
| No external refs found! |
