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  5. Cpa|evm.model.tig00000944.38

Cpa|evm.model.tig00000944.38


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NSA2 maturation factor


Gene families : OG0003771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000944.38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00185140 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
GSVIVT01011153001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Gb_20609 No alias NSA2 LSU processome maturation factor 0.01 OrthoFinder output from all 47 species
LOC_Os07g47580.1 LOC_Os07g47580 NSA2 LSU processome maturation factor 0.04 OrthoFinder output from all 47 species
Len_g01146 No alias LSU processome maturation factor *(NSA2) & original... 0.01 OrthoFinder output from all 47 species
Pnu_g01551 No alias LSU processome maturation factor *(NSA2) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g32826 No alias LSU processome maturation factor *(NSA2) & original... 0.01 OrthoFinder output from all 47 species
Sam_g40224 No alias LSU processome maturation factor *(NSA2) & original... 0.01 OrthoFinder output from all 47 species
Smo402189 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Zm00001e010952_P001 Zm00001e010952 NSA2 LSU processome maturation factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 33 259
No external refs found!