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  5. Cpa|evm.model.tig00000970.26

Cpa|evm.model.tig00000970.26


Description : Chromatin organisation.histones.H3-type histone


Gene families : OG0000128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000970.26

Target Alias Description ECC score Gene Family Method Actions
AT1G01370 HTR12, CENH3 Histone superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g08007 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26587 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g33085 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g36137 No alias histone *(H3) & original description: none 0.07 OrthoFinder output from all 47 species
Cre16.g649900 No alias Chromatin organisation.histones.H3-type histone 0.01 OrthoFinder output from all 47 species
Dac_g14466 No alias histone *(H3) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g00861 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g10207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25724 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c22_4790V3.1 Pp3c22_4790 Histone superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g60005 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20165 No alias histone H3 variant *(CENH3) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc01g095650.4.1 HTR12, CENH3,... histone H3 variant (CENH3) 0.02 OrthoFinder output from all 47 species
Spa_g04339 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g03087 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04242 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04797 No alias histone *(H3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g09717 No alias histone *(H3) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 114
No external refs found!