Aliases : ESP3, EMB2733
Description : Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana
Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00019p00154740 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00025p00202360 | evm_27.TU.AmTr_v1... | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00110p00073830 | ESP3, EMB2733,... | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
| AT2G47250 | No alias | RNA helicase family protein | 0.02 | OrthoFinder output from all 47 species | |
| AT3G26560 | No alias | ATP-dependent RNA helicase, putative | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g060167 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g107994 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ala_g02597 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g29988 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aob_g31083 | No alias | RNA helicase *(Prp22) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g10626 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aop_g64809 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g69620 | No alias | RNA helicase *(Prp22) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aspi01Gene21867.t1 | Aspi01Gene21867 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0293.g063477 | EMB3011 | RNA helicase *(Prp16) & original description: CDS=81-3746 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g23753 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g33796 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.01G059500.1 | Ceric.01G059500 | not classified & original description: pacid=50591809... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.25G032700.1 | Ceric.25G032700 | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.34G065000.1 | Ceric.34G065000 | not classified & original description: pacid=50623415... | 0.01 | OrthoFinder output from all 47 species | |
| Cre07.g349100 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.05 | OrthoFinder output from all 47 species | |
| Cre08.g358563 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Cre24.g755347 | EMB3011 | RNA processing.RNA splicing.spliceosome... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g07089 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g11433 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g16924 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g20233 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g44524 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g01861 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g10662 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g18759 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g22606 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g25246 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01028153001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01029863001 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_13411 | EMB3011 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_14270 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_22388 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g19860.1 | LOC_Os02g19860 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os07g32430.1 | EMB3011, LOC_Os07g32430 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
| Len_g01369 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Len_g09738 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g13066 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g05720 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g35794 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| MA_10435486g0020 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.01 | OrthoFinder output from all 47 species | |
| MA_4084g0010 | HVT1, ATVT-1 | DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... | 0.01 | OrthoFinder output from all 47 species | |
| MA_5383g0010 | EMB3011 | RNA helicase (Prp16) | 0.01 | OrthoFinder output from all 47 species | |
| MA_629782g0010 | EMB3011 | Pre-mRNA-splicing factor ATP-dependent RNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
| MA_8723931g0010 | EMB3011 | RNA helicase (Prp16) | 0.01 | OrthoFinder output from all 47 species | |
| Mp1g21130.1 | No alias | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.01 | OrthoFinder output from all 47 species | |
| Mp2g13680.1 | No alias | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.05 | OrthoFinder output from all 47 species | |
| Mp7g03460.1 | EMB3011 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g15088 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g16012 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g21732 | ESP3, EMB2733 | RNA helicase *(Prp2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g17219 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g42980 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g42990 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g07808 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g18544 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g66576 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pnu_g17507 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g05341 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g02942 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14599 | No alias | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g25079 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g48742 | No alias | RNA helicase Prp43 of Intron-Lariat Spliceosome complex... | 0.02 | OrthoFinder output from all 47 species | |
| Smo429199 | No alias | Solute transport.carrier-mediated transport.MFS... | 0.02 | OrthoFinder output from all 47 species | |
| Smo82212 | ESP3, EMB2733 | RNA processing.RNA splicing.spliceosome... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g015040.4.1 | Solyc05g015040 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g039550.4.1 | Solyc07g039550 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc09g008120.4.1 | Solyc09g008120 | RNA helicase (Prp22) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g097820.3.1 | Solyc09g097820 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g076910.2.1 | EMB3011, Solyc10g076910 | RNA helicase (Prp16) | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g10527 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g17882 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g25913 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g01282 | EMB3011 | RNA helicase *(Prp16) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g31207 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e001487_P003 | Zm00001e001487 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e010450_P001 | EMB3011, Zm00001e010450 | RNA helicase (Prp16) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e014112_P001 | Zm00001e014112 | Probable pre-mRNA-splicing factor ATP-dependent RNA... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e038305_P001 | Zm00001e038305 | helicase Prp43 of Intron-Lariat Spliceosome complex | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004386 | helicase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004427 | inorganic diphosphate phosphatase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006812 | monoatomic cation transport | IEP | HCCA |
| MF | GO:0008324 | monoatomic cation transmembrane transporter activity | IEP | HCCA |
| MF | GO:0009678 | pyrophosphate hydrolysis-driven proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015318 | inorganic molecular entity transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| MF | GO:0022804 | active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022853 | active monoatomic ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0022890 | inorganic cation transmembrane transporter activity | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
| No external refs found! |
