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  5. Cpa|evm.model.tig00001003.33

Cpa|evm.model.tig00001003.33


Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS30 component


Gene families : OG0002477 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002477_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001003.33
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00192320 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
AMTR_s00068p00064720 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Adi_g108273 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Adi_g127141 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g25271 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Aop_g34461 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0068.g036442 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Cba_g65418 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g69506 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Ceric.05G056700.1 Ceric.05G056700 component *(eS30) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Ceric.20G020400.1 Ceric.20G020400 component *(eS30) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cre16.g666301 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Dcu_g18710 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g27544 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Dcu_g30165 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Dcu_g30830 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ehy_g30289 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01016902001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_16784 No alias component RPS30 of SSU proteome 0.09 OrthoFinder output from all 47 species
Gb_23464 No alias component RPS30 of SSU proteome 0.21 OrthoFinder output from all 47 species
Len_g35390 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Lfl_g13419 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31880 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10432727g0010 No alias component RPS30 of SSU proteome 0.13 OrthoFinder output from all 47 species
Mp2g24290.1 No alias component RPS30 of SSU proteome 0.28 OrthoFinder output from all 47 species
Mp8g09080.1 No alias component RPS30 of SSU proteome 0.16 OrthoFinder output from all 47 species
Nbi_g39256 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g43255 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c1_420V3.1 Pp3c1_420 Ribosomal protein S30 family protein 0.08 OrthoFinder output from all 47 species
Pp3c2_28870V3.1 Pp3c2_28870 Ribosomal protein S30 family protein 0.01 OrthoFinder output from all 47 species
Pp3c2_29010V3.1 Pp3c2_29010 Ribosomal protein S30 family protein 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008991 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0211.g025924 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05835 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Sam_g17534 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g31576 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g35687 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Sam_g36136 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.01 OrthoFinder output from all 47 species
Sam_g45897 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g52915 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Smo227173 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Solyc08g076340.3.1 Solyc08g076340 component RPS30 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc12g008700.3.1 Solyc12g008700 component RPS30 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g45532 No alias component *(eS30) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006846 Ribosomal_S30 70 127
IPR000626 Ubiquitin-like_dom 4 62
No external refs found!