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  5. Cpa|evm.model.tig00001086.7

Cpa|evm.model.tig00001086.7 (RH8, ATRH8)


Aliases : RH8, ATRH8

Description : DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa subsp. japonica


Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001086.7
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AT3G61240 No alias DEA(D/H)-box RNA helicase family protein 0.01 OrthoFinder output from all 47 species
Adi_g012833 RH8, ATRH8 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g075137 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g02069 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene16605.t1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0005.g009123 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original... 0.01 OrthoFinder output from all 47 species
Ceric.07G064200.1 RH8, ATRH8,... DDX6-type mRNA helicase *(RH12/RH8) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g08850 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01026866001 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os02g42860.1 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
LOC_Os04g45040.3 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g13816 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02022 RH8, ATRH8 DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03846 No alias DDX6-type mRNA helicase *(RH12/RH8) & original description: none 0.03 OrthoFinder output from all 47 species
Mp7g14570.1 RH8, ATRH8 DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Pp3c11_17170V3.1 RH8, ATRH8, Pp3c11_17170 RNAhelicase-like 8 0.01 OrthoFinder output from all 47 species
Zm00001e004416_P001 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e015237_P002 RH8, ATRH8,... DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006493 protein O-linked glycosylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
BP GO:0038166 angiotensin-activated signaling pathway IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 64 227
IPR001650 Helicase_C 265 371
No external refs found!