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  5. Cpa|evm.model.tig00001130.27

Cpa|evm.model.tig00001130.27


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001130.27

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT5G55550 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g022493 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g022676 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g060246 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g064547 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g112695 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g09868 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g24129 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g03820 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g010823 No alias not classified & original description: CDS=686-1789 0.01 OrthoFinder output from all 47 species
Azfi_s0149.g053226 No alias not classified & original description: CDS=547-1935 0.02 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.02 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.36G044000.1 Ceric.36G044000 not classified & original description: pacid=50569069... 0.02 OrthoFinder output from all 47 species
Cre07.g330300 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g01601 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g31601 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02177 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g46989 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g38410.1 LOC_Os08g38410 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g03313 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g17314 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_13606g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g31234 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g05992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g07014 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g11176 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g17780 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02420 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014397 No alias not classified & original description: CDS=1935-3293 0.02 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g28907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37452 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g40264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g45094 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g52022 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Solyc12g014600.2.1 Solyc12g014600 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g57064 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e033045_P001 Zm00001e033045 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006284 base-excision repair IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 14 78
IPR000504 RRM_dom 106 171
No external refs found!