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  5. Cpa|evm.model.tig00001376.20

Cpa|evm.model.tig00001376.20


Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.UAP56 helicase component


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001376.20
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Adi_g069281 No alias helicase UAP56 & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g30475 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43281.t1 Aspi01Gene43281 helicase UAP56 & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0065.g035967 No alias helicase UAP56 & original description: CDS=1-1335 0.01 OrthoFinder output from all 47 species
Cba_g05195 No alias helicase UAP56 & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g12256 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 OrthoFinder output from all 47 species
Gb_14863 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
LOC_Os01g36920.2 LOC_Os01g36920 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Lfl_g29266 No alias helicase UAP56 & original description: none 0.01 OrthoFinder output from all 47 species
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Nbi_g43202 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g061000.4.1 Solyc08g061000 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Zm00001e026684_P001 Zm00001e026684 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species
Zm00001e027715_P001 Zm00001e027715 RNA helicase (Sub2). helicase component UAP56 of... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 1 145
IPR001650 Helicase_C 185 292
No external refs found!