Description : DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica
Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00036p00225190 | evm_27.TU.AmTr_v1... | RNA processing.messenger ribonucleoprotein particle... | 0.02 | OrthoFinder output from all 47 species | |
| AT5G11200 | No alias | DEAD/DEAH box RNA helicase family protein | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g13080 | No alias | helicase UAP56 & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Mp1g02350.1 | No alias | RNA helicase (Sub2). helicase component UAP56 of... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c7_5890V3.1 | Pp3c7_5890 | DEAD/DEAH box RNA helicase family protein | 0.01 | OrthoFinder output from all 47 species | |
| Solyc06g066060.3.1 | Solyc06g066060 | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc08g061000.4.1 | Solyc08g061000 | RNA helicase (Sub2). helicase component UAP56 of... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e027715_P001 | Zm00001e027715 | RNA helicase (Sub2). helicase component UAP56 of... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
