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  5. Cpa|evm.model.tig00001408.10

Cpa|evm.model.tig00001408.10 (RAB1C, ATRAB1C, ATRABD2C)


Aliases : RAB1C, ATRAB1C, ATRABD2C

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.D-class RAB GTPase


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001408.10

Target Alias Description ECC score Gene Family Method Actions
AT1G02130 ATRAB1B, RABD2A,... RAS 5 0.03 OrthoFinder output from all 47 species
AT3G11730 ATFP8, RABD1, ATRABD1 Ras-related small GTP-binding family protein 0.01 OrthoFinder output from all 47 species
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.02 OrthoFinder output from all 47 species
AT5G47200 ATRAB1A, ATRABD2B, RAB1A RAB GTPase homolog 1A 0.04 OrthoFinder output from all 47 species
Adi_g010705 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g01035 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g42380 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0027.g023703 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: CDS=1-693 0.03 OrthoFinder output from all 47 species
Ceric.39G002700.1 RAB1C, ATRAB1C,... D-class RAB GTPase & original description:... 0.02 OrthoFinder output from all 47 species
Cre12.g560150 ATRAB1A, ATRABD2B, RAB1A Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Ehy_g31403 RAB1C, ATRAB1C, ATRABD2C not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013868001 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
LOC_Os01g08450.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.05 OrthoFinder output from all 47 species
LOC_Os02g43690.3 ATRAB1B, RABD2A,... GTP-binding protein YPTM2 OS=Zea mays... 0.03 OrthoFinder output from all 47 species
Len_g10682 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29131 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
MA_158684g0010 ATRAB1B, RABD2A,... Ras-related protein RABD2a OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp3g00710.1 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Nbi_g15119 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c10_190V3.1 ATRAB1B, RABD2A,... RAS 5 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014533 RAB1C, ATRAB1C, ATRABD2C not classified & original description: CDS=274-789 0.01 OrthoFinder output from all 47 species
Solyc01g103370.3.1 ATFP8, RABD1,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Solyc05g053940.3.1 ATRAB1B, RABD2A,... D-class RAB GTPase 0.06 OrthoFinder output from all 47 species
Spa_g05573 ATRAB1A, ATRABD2B, RAB1A D-class RAB GTPase & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g31112 RAB1C, ATRAB1C, ATRABD2C D-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015303_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.04 OrthoFinder output from all 47 species
Zm00001e023144_P001 ATRAB1B, RABD2A,... D-class RAB GTPase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015748 organophosphate ester transport IEP HCCA
BP GO:0015914 phospholipid transport IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 10 170
No external refs found!