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  5. Cpa|evm.model.tig00001466.15

Cpa|evm.model.tig00001466.15 (AtTOP3alpha, TOP3A)


Aliases : AtTOP3alpha, TOP3A

Description : DNA topoisomerase 3-alpha OS=Oryza sativa subsp. japonica


Gene families : OG0002141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001466.15

Target Alias Description ECC score Gene Family Method Actions
Aev_g23923 No alias type-1A topoisomerase TOP3b & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20898 AtTOP3alpha, TOP3A topoisomerase component *(TOP3-alpha) of RTR Holliday... 0.02 OrthoFinder output from all 47 species
Smo168492 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR006171 TOPRIM_domain 4 143
IPR013497 Topo_IA_cen 150 531
No external refs found!