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  5. Cpa|evm.model.tig00020806.25

Cpa|evm.model.tig00020806.25 (ATHMG, HMG, SSRP1, NFD)


Aliases : ATHMG, HMG, SSRP1, NFD

Description : High mobility group B protein 13 OS=Arabidopsis thaliana


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020806.25

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00240750 NFD03, HMGB3,... High mobility group B protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cba_g47055 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g51220.2 NFD2, HMG BETA... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g32678 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g61941 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species
Ppi_g18308 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g37806 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014473 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 280 346
IPR009071 HMG_box_dom 175 243
IPR009071 HMG_box_dom 364 427
No external refs found!