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  5. Cpa|evm.model.tig00020904.93

Cpa|evm.model.tig00020904.93


No description available


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020904.93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00141830 HSS, ARF1-BP,... RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
AT1G34310 ARF12 auxin response factor 12 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32717 ARF8, ATARF8 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g57848 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17748 ARF6 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45721.t2 ARF6, Aspi01Gene45721 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51864.t1 ARF16, Aspi01Gene51864 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g72993 ARF16 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g44007 ARF16 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g01740 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g03681 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01023149001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Lfl_g14944 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10460 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40946 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g42999 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c26_11550V3.1 ARF6, Pp3c26_11550 auxin response factor 6 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0047.g013444 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: CDS=1-3375 0.02 OrthoFinder output from all 47 species
Sam_g12046 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26224 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49441 ARF16 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e018761_P001 HSS, ARF1-BP,... transcription factor (ARF) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 78 146
IPR001487 Bromodomain 206 284
No external refs found!