Cpa|evm.model.tig00020912.24 (emb1473)

Aliases : emb1473

Description : 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana

Gene families : OG0006254 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006254_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020912.24

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00046p00228230	emb1473,...	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
AT1G78630	emb1473	Ribosomal protein L13 family protein	0.03	OrthoFinder output from all 47 species
Ala_g09807	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Als_g17613	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aob_g06248	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aspi01Gene67481.t1	emb1473, Aspi01Gene67481	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0224.g058887	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g03008	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Ceric.14G072800.1	emb1473, Ceric.14G072800	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Cre06.g264350	emb1473	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Ehy_g04479	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
GSVIVT01014101001	emb1473	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Gb_28095	emb1473	component psRPL13 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os01g54540.1	emb1473, LOC_Os01g54540	component psRPL13 of large ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Len_g01005	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Lfl_g03832	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
MA_10433400g0010	emb1473	component psRPL13 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
MA_27171g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Mp3g07030.1	emb1473	component psRPL13 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Ore_g11308	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Ppi_g11794	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Solyc07g062190.4.1	emb1473, Solyc07g062190	component psRPL13 of large ribosomal subunit proteome	0.04	OrthoFinder output from all 47 species
Solyc12g014390.3.1	emb1473, Solyc12g014390	component psRPL13 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Tin_g09876	emb1473	component *(uL13c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004109	coproporphyrinogen oxidase activity	IEP	HCCA
MF	GO:0004743	pyruvate kinase activity	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0030955	potassium ion binding	IEP	HCCA
MF	GO:0031420	alkali metal ion binding	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	72	105
IPR005822	Ribosomal_L13	112	158

External Links

No external refs found!

Cpa|evm.model.tig00020912.24 (emb1473)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation