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  5. Cpa|evm.model.tig00021463.11

Cpa|evm.model.tig00021463.11 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : Cell division control protein 48 homolog A OS=Arabidopsis thaliana


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021463.11

Target Alias Description ECC score Gene Family Method Actions
AT3G09840 CDC48A, CDC48, ATCDC48 cell division cycle 48 0.02 OrthoFinder output from all 47 species
Adi_g114666 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g23788 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g37022 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os10g30580.1 LOC_Os10g30580 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Msp_g15410 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g44449 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17721 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g08291 emb1354, CDC48C not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g02118 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e012761_P001 Zm00001e012761 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 135 198
IPR003959 ATPase_AAA_core 491 544
IPR003959 ATPase_AAA_core 248 361
IPR003338 CDC4_N-term_subdom 33 114
No external refs found!