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  5. Cpa|evm.model.tig00021589.28

Cpa|evm.model.tig00021589.28


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.28
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
AMTR_s00090p00083520 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
AT1G26370 No alias RNA helicase family protein 0.01 OrthoFinder output from all 47 species
AT3G62310 No alias RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g014958 EMB3011 RNA helicase *(Prp16) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g060167 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g08262 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Ala_g38553 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g39527 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g23007 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Aop_g01347 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene09277.t1 Aspi01Gene09277 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28720.t1 Aspi01Gene28720 RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30671.t1 Aspi01Gene30671 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g13014 EMB3011 RNA helicase *(Prp16) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.37G064800.1 ESP3, EMB2733,... RNA helicase *(Prp2) & original description:... 0.01 OrthoFinder output from all 47 species
Cre11.g467654 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cre24.g755347 EMB3011 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Dac_g30923 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g22478 EMB3011 RNA helicase *(Prp16) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g07449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01007911001 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder output from all 47 species
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Gb_13411 EMB3011 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
LOC_Os06g09280.1 LOC_Os06g09280 RNA helicase (Prp22) 0.01 OrthoFinder output from all 47 species
LOC_Os07g32430.1 EMB3011, LOC_Os07g32430 RNA helicase (Prp16) 0.03 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Lfl_g03223 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Mp4g02780.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.01 OrthoFinder output from all 47 species
Ore_g17219 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Ore_g30533 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18506 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g09947 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001017 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g14599 No alias RNA helicase *(Prp16) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g16290 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g29503 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48742 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Smo429199 No alias Solute transport.carrier-mediated transport.MFS... 0.03 OrthoFinder output from all 47 species
Smo82212 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder output from all 47 species
Solyc09g097820.3.1 Solyc09g097820 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Spa_g07103 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01282 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28400 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e001487_P003 Zm00001e001487 helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Zm00001e038305_P001 Zm00001e038305 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 1 54
IPR011709 DEAD-box_helicase_OB_fold 135 171
No external refs found!