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  5. Cpa|evm.model.tig00021589.29

Cpa|evm.model.tig00021589.29


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021589.29

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00124770 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Adi_g035436 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g11422 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene28720.t1 Aspi01Gene28720 RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0237.g059557 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Cba_g11619 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Cba_g23753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09304 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01021163001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Gb_11931 No alias RNA helicase (Prp22) 0.02 OrthoFinder output from all 47 species
LOC_Os03g19960.1 LOC_Os03g19960 helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 OrthoFinder output from all 47 species
Len_g01369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g05720 EMB3011 RNA helicase *(Prp16) & original description: none 0.02 OrthoFinder output from all 47 species
MA_277016g0010 ESP3, EMB2733 RNA helicase (Prp2) 0.01 OrthoFinder output from all 47 species
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Pp3c11_22160V3.1 Pp3c11_22160 ATP-dependent RNA helicase, putative 0.01 OrthoFinder output from all 47 species
Ppi_g04698 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000878 No alias not classified & original description: CDS=1-405 0.02 OrthoFinder output from all 47 species
Spa_g12111 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003642_P002 Zm00001e003642 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Zm00001e038305_P001 Zm00001e038305 helicase Prp43 of Intron-Lariat Spliceosome complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002710 Dilute_dom 454 559
IPR001650 Helicase_C 1540 1670
IPR004182 GRAM 80 183
IPR003029 S1_domain 1064 1128
IPR007502 Helicase-assoc_dom 1732 1759
No external refs found!