Cpa|evm.model.tig00021742.2 (TADA, ATTADA)

Aliases : TADA, ATTADA

Description : RNA processing.organelle machineries.RNA modification.tRNA adenine deamination.chloroplast-tRNA adenosine deaminase

Gene families : OG0001810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001810_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00021742.2

Target	Alias	Description	ECC score	Gene Family Method
Adi_g081904	TADA, ATTADA	chloroplast-tRNA adenosine deaminase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g16061	emb2191	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.01	OrthoFinder output from all 47 species
Aob_g18102	TADA, ATTADA	chloroplast-tRNA adenosine deaminase & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g04715	TADA, ATTADA	chloroplast-tRNA adenosine deaminase & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g10553	TADA, ATTADA	chloroplast-tRNA adenosine deaminase & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.09G061600.1	TADA, ATTADA,...	chloroplast-tRNA adenosine deaminase & original...	0.01	OrthoFinder output from all 47 species
Nbi_g28987	emb2191	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.01	OrthoFinder output from all 47 species
Pir_g20272	emb2191	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.03	OrthoFinder output from all 47 species
Ppi_g33024	TADA, ATTADA	chloroplast-tRNA adenosine deaminase & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g09771	No alias	EC_3.5 hydrolase acting on carbon-nitrogen bond, other...	0.02	OrthoFinder output from all 47 species
Solyc07g008650.4.1	emb2191, Solyc07g008650	component TAD2 of TAD2-TAD3 tRNA adenosine deaminase complex	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002100	tRNA wobble adenosine to inosine editing	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004000	adenosine deaminase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006382	adenosine to inosine editing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008251	tRNA-specific adenosine deaminase activity	IEA	Interproscan
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	None	Extended
MF	GO:0019239	deaminase activity	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028883	tRNA_aden_deaminase	90	237

External Links

No external refs found!

Cpa|evm.model.tig00021742.2 (TADA, ATTADA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation