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  5. Gb_01459

Gb_01459


Description : pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01459
Cluster HCCA: Cluster_484

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00092510 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT1G05310 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16363 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g17009 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18114 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37035 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g40489 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16581 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16993 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26631 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07065 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08007 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12101 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18741 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g02507 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g26785 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30459 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69965 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene05718.t1 Aspi01Gene05718 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07316.t2 VGDH1, Aspi01Gene07316 pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene10492.t1 Aspi01Gene10492 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30603.t1 Aspi01Gene30603 EC_3.1 hydrolase acting on ester bond & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene31942.t1 Aspi01Gene31942 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene42303.t1 Aspi01Gene42303 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55625.t1 Aspi01Gene55625 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59347.t1 Aspi01Gene59347 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene59355.t1 Aspi01Gene59355 pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene63093.t1 Aspi01Gene63093 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008131 No alias pectin methylesterase & original description: CDS=1-870 0.03 OrthoFinder output from all 47 species
Cba_g03729 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g11546 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.03G008900.1 Ceric.03G008900 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.29G054600.1 Ceric.29G054600 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g05020 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11729 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15370 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g28954 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51244 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g27753 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05158 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09632 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12392 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12470 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12472 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13223 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13224 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14386 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18839 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19236 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26229 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014641001 QRT1 Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01031250001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
LOC_Os05g44600.1 LOC_Os05g44600 pectin methylesterase 0.02 OrthoFinder output from all 47 species
LOC_Os09g39760.1 LOC_Os09g39760 pectin methylesterase 0.04 OrthoFinder output from all 47 species
Len_g53837 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09832 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19805 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40175 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10428610g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_181657g0020 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_18312g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_304854g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_66089g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp2g01420.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp4g01190.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Msp_g37045 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g39582 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g44845 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00669 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03614 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08076 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13329 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g27443 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26065 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39490 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g42824 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g35988 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29894 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61465 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63851 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0104.g020122 No alias not classified & original description: CDS=269-877 0.03 OrthoFinder output from all 47 species
Smo81583 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
Solyc01g079180.4.1 Solyc01g079180 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Solyc09g091730.4.1 Solyc09g091730 pectin methylesterase 0.01 OrthoFinder output from all 47 species
Spa_g11007 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g29524 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47305 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15602 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35486 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g36991 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43829 No alias pecTin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e029074_P001 Zm00001e029074 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e035522_P001 QRT1, Zm00001e035522 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 84 375
No external refs found!