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  5. Gb_01673

Gb_01673 (PKR1, CHR4)


Aliases : PKR1, CHR4

Description : Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana (sp|f4kbp5|chr4_arath : 323.0)


Gene families : OG0004810 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004810_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_01673

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00090060 MOM1, MOM,... Helicase protein MOM1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT1G08060 MOM1, MOM ATP-dependent helicase family protein 0.08 OrthoFinder output from all 47 species
Adi_g086251 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g25806 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02731 CHR5 DNA helicase *(MOM1) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g14006 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G083100.1 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description:... 0.05 OrthoFinder output from all 47 species
Dcu_g15932 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15408 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23969 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25172 PKL, GYM, CHR6,... DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025216001 MOM1, MOM Helicase protein MOM1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
LOC_Os02g02050.1 MOM1, MOM, LOC_Os02g02050 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os06g01320.1 MOM1, MOM, LOC_Os06g01320 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g57128 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g07857 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.08 OrthoFinder output from all 47 species
MA_9572741g0010 ATMBD9, MBD9 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g13654 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g10244 CHR5 DNA helicase *(MOM1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g25097 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g62119 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g58376 MOM1, MOM DNA helicase *(MOM1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27616 No alias DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Smo440558 PKL, GYM, CHR6,... Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Solyc06g010240.3.1 MOM1, MOM, Solyc06g010240 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g07008 PKR1, CHR4 DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20582 CHR01, CHR1,... DNA helicase *(MOM1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e036737_P001 MOM1, MOM, Zm00001e036737 Helicase protein MOM1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 742 783
IPR023780 Chromo_domain 829 866
IPR011124 Znf_CW 427 470
IPR001650 Helicase_C 1215 1324
IPR000330 SNF2_N 919 1188
IPR019787 Znf_PHD-finger 594 639
No external refs found!