Gb_02925 (ARF19, IAA22, ARF11)

Aliases : ARF19, IAA22, ARF11

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_02925

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00034p00110140	ARF4	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
AMTR_s00057p00141830	HSS, ARF1-BP,...	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
AMTR_s00092p00072950	ARF6,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Adi_g107312	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06926	ARF1	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g11834	ARF16	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g33060	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g12632	ARF16	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene11714.t1	ARF6, Aspi01Gene11714	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27221.t1	ARF16, Aspi01Gene27221	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46203.t1	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46204.t2	HSS, ARF1-BP,...	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0065.g035933	ARF6	not classified & original description: CDS=1-678	0.06	OrthoFinder output from all 47 species
Cba_g07702	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g12691	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g20944	ARF16	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g46643	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08681	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g12286	ARF10	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01015035001	ARF19, IAA22, ARF11	RNA biosynthesis.transcriptional activation.B3...	0.06	OrthoFinder output from all 47 species
GSVIVT01025691001	ARF16	RNA biosynthesis.transcriptional activation.B3...	0.05	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_23328	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os06g46410.1	ARF6, LOC_Os06g46410	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
LOC_Os11g32110.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
MA_103763g0010	ARF6	Auxin response factor 6 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Mp1g12750.1	ARF6	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Msp_g15857	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g04470	ARF1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g19283	ARF4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g29226	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g19455	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212	ARF4	not classified & original description: CDS=1-1212	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001668	ARF1	ARF-type transcription factor & original description: CDS=1-2553	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019239	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: CDS=1-3375	0.02	OrthoFinder output from all 47 species
Smo117217	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Smo437944	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
Solyc01g103050.3.1	ARF1, Solyc01g103050	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e032423_P002	ARF3, ETT, Zm00001e032423	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0008374	O-acyltransferase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	830	916
IPR010525	ARF_dom	94	177
IPR003340	B3_DNA-bd	6	69

External Links

No external refs found!

Gb_02925 (ARF19, IAA22, ARF11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation