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  5. Gb_03545

Gb_03545 (OTP86)


Aliases : OTP86

Description : Pentatricopeptide repeat-containing protein At3g63370, chloroplastic OS=Arabidopsis thaliana (sp|q9m1v3|pp296_arath : 612.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_03545

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00115350 RARE1,... Pentatricopeptide repeat-containing protein At5g13270,... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species
AT1G14470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g38174 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g06739 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g04184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08872 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g15305 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g28175 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g30099 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene02394.t1 Aspi01Gene02394 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.16G011900.1 EMB2758, Ceric.16G011900 not classified & original description: pacid=50589297... 0.04 OrthoFinder output from all 47 species
Ceric.19G003900.1 Ceric.19G003900 not classified & original description: pacid=50575192... 0.02 OrthoFinder output from all 47 species
Dde_g21669 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22321 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23588 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 OrthoFinder output from all 47 species
Lfl_g05723 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_111990g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_139163g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_153011g0010 MEF1 RNA editing factor (MEF1) 0.04 OrthoFinder output from all 47 species
MA_59599g0010 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10571 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g11418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20499 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g32347 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38695 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g07306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g21836 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g23525 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g34904 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g52106 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57688 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g44228 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 421 468
IPR002885 Pentatricopeptide_repeat 319 367
IPR002885 Pentatricopeptide_repeat 522 569
IPR002885 Pentatricopeptide_repeat 623 670
IPR002885 Pentatricopeptide_repeat 219 266
IPR032867 DYW_dom 795 852
IPR002885 Pentatricopeptide_repeat 595 622
IPR002885 Pentatricopeptide_repeat 697 720
IPR002885 Pentatricopeptide_repeat 496 521
IPR002885 Pentatricopeptide_repeat 395 420
IPR002885 Pentatricopeptide_repeat 122 147
No external refs found!