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  5. Gb_04828

Gb_04828


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 619.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04828
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT2G20540 MEF21 mitochondrial editing factor 21 0.04 OrthoFinder output from all 47 species
AT3G23330 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 OrthoFinder output from all 47 species
Gb_03570 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
Gb_06193 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_07756 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_11545 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_14728 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 OrthoFinder output from all 47 species
Gb_16895 CRR2 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_18149 CRR2 OTP70 plastidial RNA splicing factor 0.05 OrthoFinder output from all 47 species
Gb_21351 VAC1, ECB2, ATECB2 RNA editing factor (CRR21) 0.04 OrthoFinder output from all 47 species
Gb_24126 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_25555 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_27291 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_31474 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_32921 OTP84 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_33959 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_39725 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_10426261g0020 CRR22 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_10430355g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_11454g0010 OTP84 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_13022g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_139163g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_193080g0010 CRR22 Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
MA_3502g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_376862g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.09 OrthoFinder output from all 47 species
MA_42343g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_59148g0010 CRR22 RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
MA_658463g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_681272g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
MA_68718g0020 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_724726g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 OrthoFinder output from all 47 species
MA_7379g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 OrthoFinder output from all 47 species
MA_75133g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_87646g0010 No alias RNA editing factor (MEF13) 0.04 OrthoFinder output from all 47 species
MA_9384g0020 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.07 OrthoFinder output from all 47 species
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 520 544
IPR002885 Pentatricopeptide_repeat 319 343
IPR002885 Pentatricopeptide_repeat 585 612
IPR002885 Pentatricopeptide_repeat 344 392
IPR002885 Pentatricopeptide_repeat 444 491
IPR002885 Pentatricopeptide_repeat 141 188
IPR002885 Pentatricopeptide_repeat 243 289
IPR032867 DYW_dom 618 742
No external refs found!