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  5. Gb_05262

Gb_05262 (NRPC2)


Aliases : NRPC2

Description : subunit 2 of Pol III RNA polymerase


Gene families : OG0000511 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000511_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05262

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00181410 EMB1989, RPB2,... RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.04 OrthoFinder output from all 47 species
AT5G45140 NRPC2 nuclear RNA polymerase C2 0.04 OrthoFinder output from all 47 species
Aev_g39406 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ala_g05404 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ala_g21244 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Aop_g11083 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.02 OrthoFinder output from all 47 species
Ceric.05G021300.1 EMB1989, RPB2,... component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
Cre12.g542800 NRPC2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 OrthoFinder output from all 47 species
Dac_g02906 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.03 OrthoFinder output from all 47 species
Dde_g01758 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Ehy_g24202 DRD2, NRPE2,... component *(NRPE2) of RNA polymerase V complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01020543001 EMB1989, RPB2, NRPB2 RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 OrthoFinder output from all 47 species
GSVIVT01036596001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01036597001 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os03g28960.1 NRPC2, LOC_Os03g28960 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g44484.1 EMB1989, RPB2,... DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.04 OrthoFinder output from all 47 species
Len_g16317 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g12805 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.04 OrthoFinder output from all 47 species
MA_10233545g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_10429035g0010 EMB1989, RPB2, NRPB2 DNA-directed RNA polymerase II subunit RPB2 OS=Solanum... 0.02 OrthoFinder output from all 47 species
MA_10429035g0020 EMB1989, RPB2, NRPB2 subunit 2 of Pol II RNA polymerase 0.02 OrthoFinder output from all 47 species
MA_342841g0010 NRPC2 DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g25703 EMB1989, RPB2, NRPB2 component *(NRPB2) of RNA polymerase II complex &... 0.03 OrthoFinder output from all 47 species
Pp3c3_37780V3.1 Pp3c3_37780 DNA-directed RNA polymerase family protein 0.01 OrthoFinder output from all 47 species
Sam_g16160 No alias component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Sam_g26686 No alias component *(NRPB2) of RNA polymerase II complex &... 0.02 OrthoFinder output from all 47 species
Solyc02g078260.3.1 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.03 OrthoFinder output from all 47 species
Solyc03g110880.4.1 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.03 OrthoFinder output from all 47 species
Solyc10g078860.2.1 NRPC2, Solyc10g078860 subunit 2 of Pol III RNA polymerase 0.03 OrthoFinder output from all 47 species
Spa_g04426 NRPC2 component *(NRPC2) of RNA polymerase III complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e005007_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species
Zm00001e006792_P001 DRD2, NRPE2,... subunit 2 of Pol IV RNA polymerase. subunit 2 of Pol V... 0.02 OrthoFinder output from all 47 species
Zm00001e012400_P001 EMB1989, RPB2,... subunit 2 of Pol II RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 58 441
IPR007647 RNA_pol_Rpb2_5 11 51
IPR007641 RNA_pol_Rpb2_7 443 533
No external refs found!