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  5. Gb_05320

Gb_05320 (LRL3)


Aliases : LRL3

Description : transcription factor (bHLH)


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05320

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00245920 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00228970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00106p00127480 UNE10,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AT1G02340 HFR1, FBI1, REP1, RSF1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G25330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G27740 RSL4 root hair defective 6-like 4 0.05 OrthoFinder output from all 47 species
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.04 OrthoFinder output from all 47 species
AT2G18300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G42280 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 OrthoFinder output from all 47 species
AT3G42310 No alias unknown protein; Has 66 Blast hits to 66 proteins in 13... 0.03 OrthoFinder output from all 47 species
AT4G34530 CIB1 cryptochrome-interacting basic-helix-loop-helix 1 0.03 OrthoFinder output from all 47 species
AT4G36540 BEE2 BR enhanced expression 2 0.03 OrthoFinder output from all 47 species
AT4G36930 SPT basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G37800 ATRSL1, RSL1 RHD SIX-LIKE 1 0.05 OrthoFinder output from all 47 species
AT5G50915 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G58010 LRL3 LJRHL1-like 3 0.04 OrthoFinder output from all 47 species
Adi_g012121 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085081 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aev_g03333 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ala_g10304 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10321 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26070 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26152 No alias regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Ala_g26607 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01540 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g09007 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g22777 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40845 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21701 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aop_g21794 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g60014 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene01205.t1 CIB1, Aspi01Gene01205 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35112.t2 SPT, Aspi01Gene35112 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene37755.t1 Aspi01Gene37755 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46202.t1 Aspi01Gene46202 regulatory protein (CIB) of blue light perception &... 0.06 OrthoFinder output from all 47 species
Azfi_s0104.g044857 SPT bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0482.g073137 LRL3 bHLH-type transcription factor & original description: CDS=1-1173 0.03 OrthoFinder output from all 47 species
Cba_g15079 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Cba_g15803 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ceric.08G020500.1 RSL2, Ceric.08G020500 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G086200.1 RSL2, Ceric.18G086200 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z049600.1 Ceric.1Z049600 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ceric.28G002800.1 Ceric.28G002800 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.31G051300.1 LRL3, Ceric.31G051300 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g11083 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g23770 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Dcu_g25890 RHD6 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g08111 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03638 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g03657 LRL3 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05767 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ehy_g06129 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16366 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18466 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g29687 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01023783001 CIB1 External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
GSVIVT01028516001 PIL5, PIF1 External stimuli response.light.red/far red light.PIF... 0.03 OrthoFinder output from all 47 species
GSVIVT01031338001 PIF3, POC1, PAP3 External stimuli response.light.red/far red light.PIF... 0.03 OrthoFinder output from all 47 species
Gb_21260 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.05 OrthoFinder output from all 47 species
Gb_21366 UNE12 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Gb_30387 UNE10 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
LOC_Os01g02110.1 RHD6, LOC_Os01g02110 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os01g43680.3 LOC_Os01g43680 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os01g51140.1 LOC_Os01g51140 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os02g47660.1 CIB1, LOC_Os02g47660 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g10770.1 RSL2, LOC_Os03g10770 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os03g42100.1 RSL2, LOC_Os03g42100 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os04g41229.1 LOC_Os04g41229 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os05g04740.2 PIF3, POC1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os05g46370.1 LOC_Os05g46370 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g06900.1 SPT, LOC_Os06g06900 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os06g08500.1 LRL3, LOC_Os06g08500 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g41060.1 LOC_Os06g41060 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os07g39940.1 RSL2, LOC_Os07g39940 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os09g28210.1 HEC1, LOC_Os09g28210 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
LOC_Os09g33580.2 LOC_Os09g33580 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os11g25560.1 LOC_Os11g25560 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os11g41640.1 RSL4, LOC_Os11g41640 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os12g39850.1 RSL4, LOC_Os12g39850 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Len_g13542 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Lfl_g20995 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Lfl_g37660 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
MA_120179g0010 UNE12 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_158362g0010 CIB5 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
MA_88831g0010 No alias transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Mp5g18910.1 HEC1 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Mp6g21470.1 RSL2 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g15574 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g24041 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g03102 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g25662 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Nbi_g43908 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ore_g12865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g33206 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ore_g42592 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g27427 No alias transcriptional co-activator *(FBH) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g41705 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pir_g45935 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pnu_g09963 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27016 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c17_17000V3.1 LRL1, Pp3c17_17000 LJRHL1-like 1 0.01 OrthoFinder output from all 47 species
Pp3c3_8460V3.1 RSL2, Pp3c3_8460 ROOT HAIR DEFECTIVE 6-LIKE 2 0.01 OrthoFinder output from all 47 species
Ppi_g05246 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56046 GT140, IND1, IND, EDA33 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62088 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0082.g018070 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Sam_g43944 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sam_g50588 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo405220 HEC1 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Smo413232 RHD6 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Smo444782 LRL2 RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Solyc01g107140.3.1 Solyc01g107140 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc03g044460.1.1 HEC2, Solyc03g044460 transcription factor (bHLH) 0.06 OrthoFinder output from all 47 species
Solyc04g007300.4.1 BEE3, Solyc04g007300 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Solyc09g065820.4.1 UNE12, Solyc09g065820 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g010170.2.1 LRL1, Solyc12g010170 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Spa_g03670 RSL2 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g31230 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51777 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Tin_g13248 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g19138 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Tin_g21077 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Tin_g21602 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45190 LRL3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002331_P003 UNE10, Zm00001e002331 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e006917_P001 PIL5, PIF1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e009823_P002 LRL1, Zm00001e009823 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e010060_P001 Zm00001e010060 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e011084_P002 Zm00001e011084 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e015045_P002 Zm00001e015045 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015610_P001 RHD6, Zm00001e015610 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e025656_P001 RHD6, Zm00001e025656 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e029147_P001 HEC3, Zm00001e029147 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e032280_P001 Zm00001e032280 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Zm00001e035422_P001 RSL4, Zm00001e035422 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e037266_P001 Zm00001e037266 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e041668_P001 PIL5, PIF1,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 344 389
No external refs found!