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  5. Gb_05912

Gb_05912 (RPL16)


Aliases : RPL16

Description : component mtRPL16 of large ribosomal subunit proteome


Gene families : OG0004825 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004825_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05912
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s02809p00000680 evm_27.TU.AmTr_v1... 50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda 0.07 OrthoFinder output from all 47 species
ATCG00790 RPL16 ribosomal protein L16 0.06 OrthoFinder output from all 47 species
ATMG00080 RPL16 ribosomal protein L16 0.21 OrthoFinder output from all 47 species
Aob_g10973 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Aop_g00855 RPL16 component *(uL16m) of large mitoribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Ceric.05G042300.1 RPL16, Ceric.05G042300 component *(uL16c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.05G052200.1 RPL16, Ceric.05G052200 not classified & original description: pacid=50577977... 0.1 OrthoFinder output from all 47 species
Ceric.29G004300.1 RPL16, Ceric.29G004300 not classified & original description: pacid=50624823... 0.05 OrthoFinder output from all 47 species
Ceric.35G023300.1 RPL16, Ceric.35G023300 not classified & original description: pacid=50581973... 0.02 OrthoFinder output from all 47 species
Ceric.38G009100.1 RPL16, Ceric.38G009100 component *(uL16c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
LOC_Os12g34128.1 LOC_Os12g34128 component mtRPL16 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
Mp1g22400.1 No alias 60S ribosomal protein L16, mitochondrial OS=Marchantia... 0.03 OrthoFinder output from all 47 species
Ore_g00369 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s3366.g028729 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s3471.g028812 RPL16 component *(uL16c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g33347 No alias component *(uL16m) of large mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc00g500245.1.1 Solyc00g500245 component mtRPL16 of large ribosomal subunit proteome.... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 59 174
IPR001351 Ribosomal_S3_C 1 57
No external refs found!