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  5. Gb_05982

Gb_05982


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 630.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05982

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.08 OrthoFinder output from all 47 species
AMTR_s00092p00064890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.05 OrthoFinder output from all 47 species
Adi_g024727 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110188 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13651 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g10918 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31164 SLO1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06035 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06784 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18621 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24105 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26267 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30770 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g47378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61873 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11288 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23203 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g32690 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene27883.t1 Aspi01Gene27883 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0007.g010584 No alias not classified & original description: CDS=134-2257 0.04 OrthoFinder output from all 47 species
Cba_g11842 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45912 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g77657 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.18G077100.1 Ceric.18G077100 not classified & original description: pacid=50621411... 0.06 OrthoFinder output from all 47 species
Ceric.21G053500.1 Ceric.21G053500 not classified & original description: pacid=50604142... 0.07 OrthoFinder output from all 47 species
Dcu_g50973 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g21750 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003650001 OTP80 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
GSVIVT01009977001 No alias Pentatricopeptide repeat-containing protein At1g43980,... 0.07 OrthoFinder output from all 47 species
GSVIVT01032950001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_06576 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.02 OrthoFinder output from all 47 species
Len_g04760 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18212 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g26580 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07048 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g17305 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_3462g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.1 OrthoFinder output from all 47 species
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Msp_g11635 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g29094 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g37758 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41257 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g03158 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g15159 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15428 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g31776 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g43234 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g02568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13563 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32595 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57069 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57550 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57688 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g57726 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63775 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63863 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g64818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g65182 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g66012 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15704 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g29968 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15720 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43466 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008229 No alias not classified & original description: CDS=1-3597 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022894 No alias not classified & original description: CDS=1-2625 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023738 CRR2 not classified & original description: CDS=3678-5561 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0208.g025848 No alias not classified & original description: CDS=1-2184 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0233.g026492 No alias not classified & original description: CDS=48-2072 0.07 OrthoFinder output from all 47 species
Sam_g40196 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g45773 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo107700 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo112044 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 OrthoFinder output from all 47 species
Smo130453 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Smo136241 EMB2758 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Solyc01g081290.4.1 Solyc01g081290 protein kinase (PEPRK) 0.03 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g07009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g07289 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g20167 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20187 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23970 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30384 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g32773 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g05976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46355 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e005071_P002 OSB1, Zm00001e005071 ssDNA-binding protein (OSB) 0.09 OrthoFinder output from all 47 species
Zm00001e032581_P001 Zm00001e032581 RNA editing factor (BLX) 0.03 OrthoFinder output from all 47 species
Zm00001e034903_P001 SLO1, Zm00001e034903 Pentatricopeptide repeat-containing protein At2g22410,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 686 810
IPR002885 Pentatricopeptide_repeat 350 382
IPR002885 Pentatricopeptide_repeat 155 203
IPR002885 Pentatricopeptide_repeat 513 561
IPR002885 Pentatricopeptide_repeat 412 459
IPR002885 Pentatricopeptide_repeat 257 289
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 63 86
IPR002885 Pentatricopeptide_repeat 587 611
IPR002885 Pentatricopeptide_repeat 290 319
IPR002885 Pentatricopeptide_repeat 656 682
No external refs found!