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  5. Gb_06648

Gb_06648 (XIC, ATXIC)


Aliases : XIC, ATXIC

Description : Myosin-17 OS=Arabidopsis thaliana (sp|f4k5j1|myo17_arath : 1869.0)


Gene families : OG0000203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06648

Target Alias Description ECC score Gene Family Method Actions
AT5G54280 ATMYOS1, ATM4, ATM2 myosin 2 0.03 OrthoFinder output from all 47 species
Aev_g14850 ATXIK, XI-17, XIK class XI myosin microfilament-based motor protein &... 0.03 OrthoFinder output from all 47 species
Aob_g14483 ATXIK, XI-17, XIK class XI myosin microfilament-based motor protein &... 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031356 ATVIIIA, VIIIA class VIII myosin microfilament-based motor protein &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000113.17 XI-16, MYA3,... Myosin-12 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020614.58 XI-8, XI-B, XIB, ATXIB Myosin-8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020951.43 ATXID, XID Myosin-10 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021108.13 XIF, ATMYO5, ATXIF Myosin-9 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Ehy_g21129 ATVIIIA, VIIIA class VIII myosin microfilament-based motor protein &... 0.02 OrthoFinder output from all 47 species
GSVIVT01014437001 ATMYOS1, ATM4, ATM2 Cytoskeleton.microfilament network.myosin... 0.06 OrthoFinder output from all 47 species
GSVIVT01028290001 XIC, ATXIC Cytoskeleton.microfilament network.myosin... 0.03 OrthoFinder output from all 47 species
Gb_03454 ATVIIIA, VIIIA class VIII myosin microfilament-based motor protein 0.04 OrthoFinder output from all 47 species
LOC_Os01g51632.1 ATXIK, XI-17,... Myosin-17 OS=Arabidopsis thaliana (sp|f4k5j1|myo17_arath : 422.0) 0.02 OrthoFinder output from all 47 species
LOC_Os07g37560.1 ATMYOS1, ATM4,... class VIII myosin microfilament-based motor protein 0.04 OrthoFinder output from all 47 species
Pir_g31394 ATMYOS1, ATM4, ATM2 class VIII myosin microfilament-based motor protein &... 0.04 OrthoFinder output from all 47 species
Pnu_g28858 XIF, ATMYO5, ATXIF not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18055 No alias class XI myosin microfilament-based motor protein &... 0.02 OrthoFinder output from all 47 species
Solyc07g041150.4.1 ATXIK, XI-17,... class XI myosin microfilament-based motor protein 0.03 OrthoFinder output from all 47 species
Zm00001e012626_P001 ATVIIIA, VIIIA,... class VIII myosin microfilament-based motor protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016459 myosin complex IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR004009 Myosin_N 404 440
IPR000048 IQ_motif_EF-hand-BS 1279 1296
IPR000048 IQ_motif_EF-hand-BS 1252 1272
IPR000048 IQ_motif_EF-hand-BS 1230 1248
IPR000048 IQ_motif_EF-hand-BS 1403 1422
IPR002710 Dilute_dom 1923 2048
IPR001609 Myosin_head_motor_dom 458 838
IPR001609 Myosin_head_motor_dom 903 936
IPR001609 Myosin_head_motor_dom 1004 1213
No external refs found!