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  5. Gb_06825

Gb_06825 (PSBD)


Aliases : PSBD

Description : no description available(sp|q85ac9|psbd_antag : 421.0)


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06825
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.02 OrthoFinder output from all 47 species
Als_g05104 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0026.g023368 No alias not classified & original description: CDS=1-396 0.03 OrthoFinder output from all 47 species
Azfi_s0192.g057044 No alias not classified & original description: CDS=1-339 0.03 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.02 OrthoFinder output from all 47 species
Dcu_g40925 PSBA not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01016441001 PSBA Photosystem II protein D1 OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.03 OrthoFinder output from all 47 species
LOC_Os02g24634.1 PSBD, LOC_Os02g24634 component PsbD/D2 of PS-II reaction center complex 0.02 OrthoFinder output from all 47 species
LOC_Os04g16872.1 PSBD, LOC_Os04g16872 component PsbD/D2 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
LOC_Os10g21192.1 PSBA, LOC_Os10g21192 component PsbA/D1 of PS-II reaction center complex 0.03 OrthoFinder output from all 47 species
LOC_Os12g19580.1 PSBA, LOC_Os12g19580 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.03 OrthoFinder output from all 47 species
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.03 OrthoFinder output from all 47 species
Msp_g06249 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.02 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.02 OrthoFinder output from all 47 species
Sam_g01382 No alias component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Sam_g05154 No alias component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.02 OrthoFinder output from all 47 species
Zm00001e015953_P001 PSBD, Zm00001e015953 component PsbD/D2 of PS-II reaction center complex 0.02 OrthoFinder output from all 47 species
Zm00001e042113_P001 PSBA, Zm00001e042113 Photosystem II protein D1 OS=Zea mays... 0.02 OrthoFinder output from all 47 species
Zm00001e042176_P001 PSBA, Zm00001e042176 component PsbA/D1 of PS-II reaction center complex 0.02 OrthoFinder output from all 47 species
Zm00001e042427_P001 PSBD, Zm00001e042427 component PsbD/D2 of PS-II reaction center complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0009521 photosystem IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 69 168
No external refs found!