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  5. Gb_07052

Gb_07052


Description : RNA editing factor (ORRM)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07052

Target Alias Description ECC score Gene Family Method Actions
AT3G23830 GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 0.02 OrthoFinder output from all 47 species
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.04 OrthoFinder output from all 47 species
Adi_g016847 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08147 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10428777g0010 CCR2, ATGRP7,... Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.04 OrthoFinder output from all 47 species
Pp3c12_23410V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.02 OrthoFinder output from all 47 species
Ppi_g31703 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g52954 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008411 No alias RNA chaperone *(RZ1) & original description: CDS=12-860 0.03 OrthoFinder output from all 47 species
Sam_g10757 No alias RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g38660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Solyc01g104840.4.1 ATRZ-1A, Solyc01g104840 RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species
Solyc05g053780.4.1 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.05 OrthoFinder output from all 47 species
Spa_g22222 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00653 GR-RBP5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008185_P001 Zm00001e008185 Small RNA-binding protein 11, chloroplastic... 0.04 OrthoFinder output from all 47 species
Zm00001e018490_P002 Zm00001e018490 Glycine-rich RNA-binding protein 2, mitochondrial... 0.03 OrthoFinder output from all 47 species
Zm00001e039608_P001 GR-RBP3, Zm00001e039608 RNA editing factor (ORRM) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 46 112
No external refs found!