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  5. Gb_07754

Gb_07754 (CRR22)


Aliases : CRR22

Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 499.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_07754
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Dcu_g06431 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06828 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 OrthoFinder output from all 47 species
Gb_24126 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_28037 CRR22 RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_28390 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_29466 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
Gb_37176 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.06 OrthoFinder output from all 47 species
Gb_38301 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_39440 CRR22 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder output from all 47 species
Gb_40388 LOI1, MEF11 RNA editing factor (MEF11) 0.05 OrthoFinder output from all 47 species
Gb_41325 CRR22 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_138676g0010 EMB2261 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
MA_16823g0010 CRR22 RNA editing factor (MEF19) 0.03 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.06 OrthoFinder output from all 47 species
MA_2991g0010 No alias RNA editing factor (MEF12) 0.02 OrthoFinder output from all 47 species
MA_30949g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.07 OrthoFinder output from all 47 species
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.08 OrthoFinder output from all 47 species
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_481619g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.08 OrthoFinder output from all 47 species
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
MA_681272g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species
MA_86628g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_89214g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Pnu_g03485 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e013211_P001 OTP82, Zm00001e013211 Pentatricopeptide repeat-containing protein At5g48910... 0.02 OrthoFinder output from all 47 species
Zm00001e030553_P001 Zm00001e030553 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.04 OrthoFinder output from all 47 species
Zm00001e035419_P001 Zm00001e035419 Pentatricopeptide repeat-containing protein At1g25360... 0.02 OrthoFinder output from all 47 species
Zm00001e035764_P001 Zm00001e035764 Pentatricopeptide repeat-containing protein At2g34400... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 331 378
IPR002885 Pentatricopeptide_repeat 431 480
IPR002885 Pentatricopeptide_repeat 74 123
IPR002885 Pentatricopeptide_repeat 151 176
IPR002885 Pentatricopeptide_repeat 271 300
IPR002885 Pentatricopeptide_repeat 506 531
IPR002885 Pentatricopeptide_repeat 240 270
IPR002885 Pentatricopeptide_repeat 209 239
IPR002885 Pentatricopeptide_repeat 178 207
No external refs found!