Gb_08702

Description : subfamily ABCB transporter

Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_08702

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00263610	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00254310	ABCB19,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
AT1G10680	PGP10	P-glycoprotein 10	0.04	OrthoFinder output from all 47 species
AT5G46540	PGP7	P-glycoprotein 7	0.03	OrthoFinder output from all 47 species
Ala_g15212	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g26174	No alias	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g05763	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07131	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g18810	PGP2	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g33230	ABCB14, ATABCB14, PGP14	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14003	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene20594.t1	PGP20, Aspi01Gene20594	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene20595.t1	PGP20, Aspi01Gene20595	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene20710.t1	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0039.g026389	PGP11	subfamily ABCB transporter & original description: CDS=323-4378	0.03	OrthoFinder output from all 47 species
Cba_g07645	PGP13	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g59935	ABCB19,...	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.06G076400.1	ABCB19,...	subfamily ABCB transporter & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g10744	PGP6	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g12633	PGP2	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g43354	ABCB19,...	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g44934	PGP11	subfamily ABCB transporter & original description: none	0.04	OrthoFinder output from all 47 species
Gb_08616	ATPGP4, PGP4, ABCB4, MDR4	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_10211	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Gb_36497	No alias	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Gb_36503	No alias	serine carboxypeptidase. subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
LOC_Os01g34970.1	PGP11, LOC_Os01g34970	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
LOC_Os04g38570.1	ABCB19,...	auxin efflux transporter (ABCB19)	0.03	OrthoFinder output from all 47 species
Len_g49095	PGP11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_126766g0010	PGP2	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
MA_1824g0020	No alias	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
MA_3437g0010	No alias	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
MA_934204g0010	No alias	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g06270.1	PGP20	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Mp2g11920.1	ABCB19,...	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Msp_g35589	ABCB19,...	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g03862	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g18266	ABCB19,...	subfamily ABCB transporter & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g38310	PGP13	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43029	PGP2	subfamily ABCB transporter & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g04029	PGP11	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010416	ABCB19,...	subfamily ABCB transporter & original description: CDS=327-1289	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0054.g014291	PGP2	subfamily ABCB transporter & original description: CDS=1-4248	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017905	PGP11	not classified & original description: CDS=139-861	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019197	No alias	subfamily ABCB transporter & original description: CDS=1-2220	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0111.g020710	ABCB19,...	not classified & original description: CDS=1-1380	0.05	OrthoFinder output from all 47 species
Spa_g56665	ABCB19,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003866_P001	PGP1, ABCB1,...	subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species
Zm00001e014797_P002	Zm00001e014797	subfamily ABCB transporter	0.02	OrthoFinder output from all 47 species
Zm00001e017444_P002	PGP21, Zm00001e017444	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e020770_P002	PGP11, Zm00001e020770	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e025438_P001	PGP21, Zm00001e025438	subfamily ABCB transporter	0.03	OrthoFinder output from all 47 species
Zm00001e041008_P003	ABCB19,...	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	376	524
IPR011527	ABC1_TM_dom	33	304
IPR011527	ABC1_TM_dom	670	937
IPR003439	ABC_transporter-like_ATP-bd	1009	1157

External Links

No external refs found!

Gb_08702

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation