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  5. Gb_08772

Gb_08772 (OTP84)


Aliases : OTP84

Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 692.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08772

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00175270 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31790... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
AMTR_s00088p00046850 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
Ala_g38429 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g37786 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g38061 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29889 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.23G075200.1 Ceric.23G075200 not classified & original description: pacid=50610693... 0.05 OrthoFinder output from all 47 species
Dcu_g05754 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06464 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08687 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g22451 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g41810 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g46395 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g47671 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012461001 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
GSVIVT01033735001 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.05 OrthoFinder output from all 47 species
Gb_02065 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_27377 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
LOC_Os03g64370.1 LOC_Os03g64370 Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g02850.1 OTP84, LOC_Os04g02850 RNA editing factor (OTP84) 0.03 OrthoFinder output from all 47 species
LOC_Os08g13990.1 LOC_Os08g13990 Pentatricopeptide repeat-containing protein At2g37320... 0.05 OrthoFinder output from all 47 species
LOC_Os12g30620.1 LOC_Os12g30620 Pentatricopeptide repeat-containing protein At3g29230... 0.04 OrthoFinder output from all 47 species
Len_g03710 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g03784 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g07790 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09780 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22995 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g38488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g55705 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g15182 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10138132g0010 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.04 OrthoFinder output from all 47 species
MA_10431227g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_117650g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_123466g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.06 OrthoFinder output from all 47 species
MA_175623g0010 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.08 OrthoFinder output from all 47 species
MA_20622g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_210089g0010 CRR22 Pentatricopeptide repeat-containing protein At2g13600... 0.06 OrthoFinder output from all 47 species
MA_6329g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_9526611g0020 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Nbi_g26265 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g28136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38653 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g42976 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo17005 PDE247, CLB19 Pentatricopeptide repeat-containing protein At2g17210... 0.07 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.05 OrthoFinder output from all 47 species
Spa_g29031 REME1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g44240 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e002552_P001 Zm00001e002552 RNA editing factor (SEL1/PDM1) 0.02 OrthoFinder output from all 47 species
Zm00001e029119_P001 Zm00001e029119 Pentatricopeptide repeat-containing protein At2g33760... 0.04 OrthoFinder output from all 47 species
Zm00001e031351_P001 EMB2261, Zm00001e031351 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 638 662
IPR002885 Pentatricopeptide_repeat 564 611
IPR002885 Pentatricopeptide_repeat 463 511
IPR002885 Pentatricopeptide_repeat 362 403
IPR002885 Pentatricopeptide_repeat 261 308
IPR002885 Pentatricopeptide_repeat 160 207
IPR032867 DYW_dom 737 861
No external refs found!