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  5. Gb_11036

Gb_11036 (CRR22)


Aliases : CRR22

Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 418.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11036
Cluster HCCA: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 OrthoFinder output from all 47 species
AMTR_s00019p00093260 SLO1,... Pentatricopeptide repeat-containing protein At2g22410,... 0.03 OrthoFinder output from all 47 species
GSVIVT01031292001 No alias Pentatricopeptide repeat-containing protein At1g56690,... 0.08 OrthoFinder output from all 47 species
Gb_08619 No alias RNA editing factor (MEF19) 0.06 OrthoFinder output from all 47 species
Gb_08744 CRR22 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 OrthoFinder output from all 47 species
Gb_14392 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.08 OrthoFinder output from all 47 species
Gb_14403 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
Gb_23967 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_33062 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
Gb_37176 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 OrthoFinder output from all 47 species
Len_g04775 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g04836 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54663 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_108139g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_11138g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 OrthoFinder output from all 47 species
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.05 OrthoFinder output from all 47 species
MA_217g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_50118g0010 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_5481g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.05 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_858608g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.08 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Smo111891 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species
Solyc06g009500.1.1 Solyc06g009500 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 516 540
IPR002885 Pentatricopeptide_repeat 416 441
IPR002885 Pentatricopeptide_repeat 240 288
IPR002885 Pentatricopeptide_repeat 341 388
IPR002885 Pentatricopeptide_repeat 442 490
IPR002885 Pentatricopeptide_repeat 142 189
IPR002885 Pentatricopeptide_repeat 298 340
No external refs found!