Gb_14269

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 OS=Arabidopsis thaliana (sp|q38953|deah5_arath : 1774.0)

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_14269

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00074370	EMB3011,...	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Aspi01Gene46881.t1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g13014	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.37G064800.1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description:...	0.03	OrthoFinder output from all 47 species
Cre03.g182950	No alias	RNA processing.RNA splicing.spliceosome...	0.02	OrthoFinder output from all 47 species
Ehy_g22606	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007911001	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
MA_10435486g0020	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Ore_g42980	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42990	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06275	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc05g015040.4.1	Solyc05g015040	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Solyc07g039550.4.1	Solyc07g039550	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	285	349
IPR011709	DEAD-box_helicase_OB_fold	1120	1195
IPR001650	Helicase_C	782	912
IPR007502	Helicase-assoc_dom	974	1062
IPR011545	DEAD/DEAH_box_helicase_dom	588	738

External Links

No external refs found!

Gb_14269

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation