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Gb_14863


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_14863
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00225190 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.06 OrthoFinder output from all 47 species
Aop_g30475 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0557.g076900 No alias helicase UAP56 & original description: CDS=1-1608 0.04 OrthoFinder output from all 47 species
Azfi_s2721.g112781 No alias helicase UAP56 & original description: CDS=1-1683 0.05 OrthoFinder output from all 47 species
Cba_g12256 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g77168 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 OrthoFinder output from all 47 species
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.05 OrthoFinder output from all 47 species
Msp_g23973 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07693 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g49064 No alias helicase UAP56 & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40258 No alias helicase UAP56 & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47104 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50791 No alias helicase UAP56 & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 276 383
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
No external refs found!