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  5. Gb_16032

Gb_16032 (EMB2261)


Aliases : EMB2261

Description : Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana (sp|q5g1t1|pp272_arath : 638.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16032

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.04 OrthoFinder output from all 47 species
AT5G66520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01008407001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
GSVIVT01009976001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
GSVIVT01012174001 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.03 OrthoFinder output from all 47 species
GSVIVT01017763001 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.04 OrthoFinder output from all 47 species
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.09 OrthoFinder output from all 47 species
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01036010001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_04785 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_09382 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_12240 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_18263 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
Gb_18908 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Gb_37254 OTP84 Pentatricopeptide repeat-containing protein At3g63370,... 0.05 OrthoFinder output from all 47 species
Gb_41801 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.05 OrthoFinder output from all 47 species
MA_101084g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_102449g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.08 OrthoFinder output from all 47 species
MA_10429371g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_111990g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_137736g0010 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_17949g0010 CRR22 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_322292g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_481619g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_89214g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder output from all 47 species
MA_953793g0020 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.05 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 404 428
IPR002885 Pentatricopeptide_repeat 737 759
IPR002885 Pentatricopeptide_repeat 533 559
IPR002885 Pentatricopeptide_repeat 204 227
IPR002885 Pentatricopeptide_repeat 503 531
IPR032867 DYW_dom 836 960
IPR002885 Pentatricopeptide_repeat 561 609
IPR002885 Pentatricopeptide_repeat 662 710
IPR002885 Pentatricopeptide_repeat 328 376
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 430 477
No external refs found!