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  5. Gb_18015

Gb_18015


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 627.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18015
Cluster HCCA: Cluster_471

Target Alias Description ECC score Gene Family Method Actions
Ala_g02572 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g12477 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g17653 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19488 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g24410 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g32755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g35750 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36517 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07267 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g18256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19032 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g19255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26680 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g30901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54936 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g59184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0519.g075227 No alias not classified & original description: CDS=1-1455 0.07 OrthoFinder output from all 47 species
Cba_g05866 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19910 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G040900.1 Ceric.11G040900 not classified & original description: pacid=50596742... 0.05 OrthoFinder output from all 47 species
Ceric.36G017300.1 Ceric.36G017300 not classified & original description: pacid=50568624... 0.05 OrthoFinder output from all 47 species
Dac_g12454 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22189 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g46003 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024061001 No alias Pentatricopeptide repeat-containing protein At2g21090... 0.03 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01031733001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 OrthoFinder output from all 47 species
GSVIVT01036975001 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.06 OrthoFinder output from all 47 species
Gb_18462 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Len_g03387 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05419 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g07135 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17755 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18579 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g18592 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19000 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g19028 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g19030 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21362 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g22137 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g33758 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44152 OTP86 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g49921 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_135075g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_81514g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Msp_g23175 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g26486 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Msp_g45879 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06311 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15700 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21727 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g38544 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g43448 OTP86 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g41304 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05803 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007839 No alias not classified & original description: CDS=1-7737 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010845 No alias not classified & original description: CDS=1-381 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019636 No alias not classified & original description: CDS=1-303 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021792 EMB2758 not classified & original description: CDS=1-2004 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0178.g024723 No alias not classified & original description: CDS=1-3261 0.04 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Tin_g03535 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g05629 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05650 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17460 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 606 730
IPR002885 Pentatricopeptide_repeat 231 277
IPR002885 Pentatricopeptide_repeat 332 379
IPR002885 Pentatricopeptide_repeat 433 479
IPR002885 Pentatricopeptide_repeat 130 177
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 508 531
No external refs found!