Gb_18738 (HSS, ARF1-BP, ARF2, ORE14)

Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : transcription factor (ARF)

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_18738

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00168950	HSS, ARF1-BP,...	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Ala_g06409	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene05878.t1	ARF8, ATARF8,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.30G022300.1	ARF6, Ceric.30G022300	ARF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g23659	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os12g29520.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.07	OrthoFinder output from all 47 species
MA_40335g0010	HSS, ARF1-BP, ARF2, ORE14	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
MA_85955g0020	ARF19, IAA22, ARF11	transcription factor (ARF)	0.06	OrthoFinder output from all 47 species
Ore_g09348	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g10257	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g103050.3.1	ARF1, Solyc01g103050	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Spa_g17172	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e013191_P001	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e014833_P002	ARF1, Zm00001e014833	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e017798_P003	HSS, ARF1-BP,...	transcription factor (ARF)	0.08	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e030325_P003	ARF6, Zm00001e030325	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e039552_P004	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e041910_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	525	626
IPR010525	ARF_dom	651	740
IPR033389	AUX/IAA_dom	1082	1229

External Links

No external refs found!

Gb_18738 (HSS, ARF1-BP, ARF2, ORE14)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation