1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_18908

Gb_18908 (CRR22)


Aliases : CRR22

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 744.0)


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18908
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00220350 OTP85,... Pentatricopeptide repeat-containing protein At2g02980,... 0.08 OrthoFinder output from all 47 species
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
AMTR_s00067p00084570 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Adi_g003785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g012547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g021650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g033167 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g069035 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g078836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g081866 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g096278 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108076 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g110083 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g128499 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_04430 OTP84 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Gb_04533 CRR22 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_05649 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_06693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_07043 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_09146 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.05 OrthoFinder output from all 47 species
Gb_09407 EMB2758 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Gb_11025 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Gb_16032 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.05 OrthoFinder output from all 47 species
Gb_24692 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_25328 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_26651 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_34248 CRR2 RNA editing factor (OTP82) 0.03 OrthoFinder output from all 47 species
Gb_35645 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Gb_36172 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.04 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_10429540g0010 LOI1, MEF11 Pentatricopeptide repeat-containing protein At4g14850... 0.03 OrthoFinder output from all 47 species
MA_10429837g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_10429958g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
MA_11765g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_136188g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_140208g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_16226g0010 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.02 OrthoFinder output from all 47 species
MA_178429g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_184104g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_27147g0010 EMB2261 Pentatricopeptide repeat-containing protein At3g49170,... 0.02 OrthoFinder output from all 47 species
MA_28607g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_305950g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_36643g0010 CRR22 Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_474261g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.2 OrthoFinder output from all 47 species
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_49292g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_519985g0010 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
MA_59148g0010 CRR22 RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
MA_658463g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
MA_724726g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_97789g0010 CRR22 Pentatricopeptide repeat-containing protein At3g26540... 0.02 OrthoFinder output from all 47 species
Smo127010 OTP81 Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Smo135822 CRR2 Pentatricopeptide repeat-containing protein At3g09040,... 0.01 OrthoFinder output from all 47 species
Smo16655 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.03 OrthoFinder output from all 47 species
Smo174459 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.01 OrthoFinder output from all 47 species
Smo24361 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.04 OrthoFinder output from all 47 species
Smo334 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 OrthoFinder output from all 47 species
Smo61257 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.01 OrthoFinder output from all 47 species
Smo82268 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.01 OrthoFinder output from all 47 species
Smo85102 REME1 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo88697 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo90222 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 OrthoFinder output from all 47 species
Smo92471 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo96227 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Smo99993 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 129 175
IPR002885 Pentatricopeptide_repeat 230 277
IPR002885 Pentatricopeptide_repeat 533 580
IPR002885 Pentatricopeptide_repeat 432 479
IPR002885 Pentatricopeptide_repeat 331 378
IPR002885 Pentatricopeptide_repeat 204 229
IPR002885 Pentatricopeptide_repeat 507 532
IPR002885 Pentatricopeptide_repeat 305 327
IPR002885 Pentatricopeptide_repeat 608 632
IPR032867 DYW_dom 706 830
No external refs found!