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  5. Gb_19726

Gb_19726 (OPCL1)


Aliases : OPCL1

Description : 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana (sp|q84p21|4cll5_arath : 520.0)


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19726
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00239750 OPCL1,... Phytohormones.jasmonic acid.synthesis.OPC-8:CoA synthetase 0.04 OrthoFinder output from all 47 species
AMTR_s00023p00136980 OPCL1,... 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00048p00141400 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00049p00100040 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica 0.04 OrthoFinder output from all 47 species
AT1G20510 OPCL1 OPC-8:0 CoA ligase1 0.03 OrthoFinder output from all 47 species
AT5G38120 4CL8 AMP-dependent synthetase and ligase family protein 0.03 OrthoFinder output from all 47 species
Aop_g06175 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene03052.t1 OPCL1, Aspi01Gene03052 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63196.t1 OPCL1, Aspi01Gene63196 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63198.t1 OPCL1, Aspi01Gene63198 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1020.g095355 No alias not classified & original description: CDS=69-1760 0.04 OrthoFinder output from all 47 species
Dcu_g10363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47602 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04748 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01010358001 No alias 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g67540.1 LOC_Os01g67540 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os03g04000.1 OPCL1, LOC_Os03g04000 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
Mp1g04990.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp1g05060.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g04839 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_24370V3.1 Pp3c3_24370 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Smo123905 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo181279 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Solyc03g111170.3.1 Solyc03g111170 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc11g007970.2.1 OPCL1, Solyc11g007970 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.02 OrthoFinder output from all 47 species
Spa_g20791 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21116 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07385 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004865_P001 Zm00001e004865 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0010215 cellulose microfibril organization IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
CC GO:0031225 obsolete anchored component of membrane IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 493 568
IPR000873 AMP-dep_Synth/Lig_com 83 484
No external refs found!